I misunderstood how the dbvalidator worked. I started the embedded database and it succeeded I think. Here is what the log says now:
2013-02-26 20:38:04.685 THREAD 1 INFO: logger initialized ...
2013-02-26 20:38:04.685 THREAD 1 INFO: SEPM Server Home:[c:\Program Files (x86)\Symantec\Symantec Endpoint Protection Manager\Tools\..\tomcat]
2013-02-26 20:38:06.355 THREAD 1 INFO: Initialized the database.
2013-02-26 20:38:11.425 THREAD 1 INFO: Starting to travel the schema ...
2013-02-26 20:38:14.045 THREAD 1 INFO: ... finished travelling schema.
2013-02-26 20:38:14.045 THREAD 1 INFO: Total ids found >> TargetIds [185] PhysicalFileIds :[57]
2013-02-26 20:38:14.045 THREAD 1 INFO: SELECT ID FROM BASIC_METADATA WHERE ID IN ('1476E5B5CC087A98C34F84369C59A78D','0404E0AC0E28C308610C28E0BAFE6367','66894B43C17167DCC5C946BBF98F182F','B417F42345DFFA6A157F743A26A5A72A','DF9C7E11C0A865D500D47C6534E36255','90EDFA86C0A865D500213E13FD99F82F','451EF1F1C0A865D5017AEA9990501342','A59A56E7C0A865D500D42D4939D82980','D6C51D90C0A865D500E007889ADE511C','44782F78C0A865D501F249084DEF7663','FE998CFEC0A865D50033D6F1ED5462B5','6B8CFCF3C0A865D50162CA061C58C54B','5DDA17265647BC4A58F9527841AC6F51','7E1E9BBBC0A865D501E0592C117C46D3','3E294F01CF81584A389E32938CFEC195','060B10F3C0A865D50129E211FB83F2F5','20D6E325C0A865D501F11BE16CDBA664','F64AF2D2FB5430DF364508D201163593','C61164E7C0A865D500556AA90F387F55','6C0FA18E6D791E6F67A160F27236E54E','C3653A1EC0A865D5001301FA62EF0F96','90F5C4F7C0A865D501978F4F53F10E1E','B2F0B636C0A865D501BBA96664B067C7','C3B1C2130729C2C72E6BE99CEDBC0DAF','C75BBF1AC0A865D500BD9256A3691CC7','99DB71F629E7EE03F543332DF260CFF7','D15FBDBAC0A865D501502283AFB00DCD','6FD723D39B5F3D8E62B86D5A5DC1E232','841DB2B3A6BBFF85002B6B9BA6346F67','1235020CC0A865D5007A78ECD2B6D79A','4E2D2D6A14F8038B1A6518C3E308496D','55D2B809C0A865D5010AC73BC2B22DFA','5F680AC8C0A865D501A996FFC1185C4F','2CF3BD7CC0A865D5006F26BB97B14D37','CCEE0591C0A865D501EE9422604060F0','B5142D6E280D45AB4BCF56DF11CEF2EE','66B60501C0A865D500AD93F6EABA4624','2822E3FAC0A865D5000B495EA68F90B4','540D6AF8C0A865D501BEFFCD61222AFE','7B7B8367C0A865D501A84F3CF8DF8B90','5B711928BD70BE882FBE553E28B2C843','E6BF0E44C0A865D5017F9A2982A45839','AF7040C9C0A865D5013FD0688BC84DCE','DAC5928BC0A865D5003DC831F5D424CD','5A1E8CFC79D0221BCD3ABAFFB1E8E497','10D13E2EC0A865D50032AF899977A2A4','DAFA11590EA4B4438A3DCE320D6B7A9F','0DBA9FFA9BD188993D44121E8D272912','1D519777C0A865D5000A8D453B645F86','A3314CB5C0A865D50026A4CE57926C04','3A2A8A1AC0A865D501B8DBA599E21A86','AF2306993021DC6080546311031A9CEE','6B404C8EC0A865D50079FF89F3A6A0C4','921F80B7C0A865D500DAAE1DC6FA04E6','E4BC6ADDC0A865D501B90C555F5D756B','0BCC789041072C9AC188AF34D6A2EC43','6E415DD8C0A865D501591DA26F728473','B1037D3DC0A865D500DC8DE9EC02A378','AC1369EFC0A865D50159BE0D8F34D5F6','2950E72AC0A865D5011CDF8A49CBB713','20A875DEC0A865D50066458B95C4DC2C','0D83C411C0A865D501E7DEB64BF90D12','E67B9C40C0A865D500B25809F0B9E885','568B410EC0A865D5006901DC89D839E0','3A18996AC0A865D501516197B189ED1A','028F0C98C0A865D5002A544E3B733D72','69F32E8BC0A865D5009FDA4179EE2396','2E3B60A0C0A865D500A39A114DDE177A','00BCA663C0A865D50163542C0FAA4D32','8CA0770CFA78AB90E1FB1310AC68F5B7','C9FAB27A15792B47A2AD911E16992271','3F30AE5C5A64256058BFFC2395867486','275A9D64C0A865D501ADC6A5D149A607','49E521F43EAD68675B0977FC47D133B9','22F0EE92C0A865D5009F0DF077A95AAD','BD3DA1FBC44BB58C7C7491FABE39E594','41B38D79C0A865D500E03BD6CA66B6C3','3E418D9EC0A865D500B9F649B3199192','AD6396F8FC5303DD9ED0FC22AB1C4884','98BBF15D0DF864D1B0164E74D0BA802B','32B95BD3EADD291F38FEC47612B1F268','B0973B5AC0A865D500CC8237539F39A5','906F12ADC0A865D501BD83B205131C76','3218C8CAC0A865D50135D8589BF6B12D','CA8C96D2C0A865D500D7E6EF6F621BAB','8B3E6337D1C2A84DB7E0340B8B3A9588','47617DFE87FBBFCE115A139521902DFA','E04882B1C0A865D50004E2AE929068A5','443F0F4D8F0D47E55DC5274A916EEF17','5A80A873C0A865D501AD3AC18D5D2849','B910E54E89EA4EF51447C7BA914C87F9','E4188F0EC0A865D500D96814BBCD1049','DB6535C2AF77888C1049E91940103C2E','F4C7A158C0A865D50084291378F62826','6028C6E625754ECE4312D41CB963A039','D27DD4B2C0A865D5004AEE539EA7E25F','221200A2C0A865D5002EB8E3E6C10E63','7A3F1CB2BAE4356DBBD3BAA95C56527B','3E9A07FFC0A865D500150C2C8C063052','2A3D2D240F7FB7FDDD954AE0799D933E','69F55822C0A865D501AAE35732B55017','5D3558D8C0A865D5003C019611756615','270FC2D89460177D5F2605D11CB93A51','88281B8641B4784A587CDE2CFA92DAE9','37480984C0A865D501E33378CCA65A22','8686B85FC0A865D501F34DAD494D2B51','F5879BBEC0A865D500BEAFE73D74980C','7ACB09446F1982F42926DD23565CFA6B','CB77039DC0A865D500803A13571DEFEC','3B993BB9C0A865D5007DAF5B9C89830B','F4CAE1F9C0A865D500B2E7B496C6C2A3','CCB602C4C0A865D50115F1D361AAC705','7A05101BC0A865D5011BBE4F027B0F02','B193E0C6C0A865D50193B520BD4CF314','8078782DC0A865D501AEA1ED68B19522','FFEE4202C0A865D5015814485F419B03','5AF09EAFC0A865D50119537A2C49BAC3','338656C8C0A865D501D62AC48486CDED','356809E5C0A865D501AD8678D37A6A1D','75FF60A1B1A83BA51A469EE6E3AC10AF','0CE428F1F05EBB5096E5531B5EBC9B7E','EEF8FE53C0A865D5004CB16250E9CBDC','3165FD56C5790BC3ED69F8C9E0099ADF','5C3A12B5C0A865D501C041FF5F5EFBE5','D3FF136037C0BA74FAFAFABF79F21524','DF5166D9C0A865D501D37013D8D30E28','91FF3703C0A865D50143CC2011128137','EEA2D55AC0A865D5010A238E2C5D466C','8945ED9544A38EADCD1FA76EF24D955B','F18E25F4C0A865D5015ED12CB22B1921','4A256622D963B59F54738BA981155378','84832AF3C0A865D50063AACE5F3C5A2D','53457F1FE2F251872E7E02F171C8ED02','307FC4A99C2D2B8F4429F6004D68E16E','B655E64D0A320801000000E164041B79','42CA4F27C0A865D5001972BF98096148','3941506DC0A865D500BF091DAC059D8D','B910F5CCC0A865D5013A4AD017B93F2B','474658E3C0A865D5019C1DC4E188C286','6C6DDEB1C0A865D50077243DDC43C8AB','B20B6E870A980D7A00AF2A50862A396D','B8989990C0A865D501B15447BFC0F801','D724BEB6C0A865D50146950C32E4CCE5','CD768331E089D91A9CCB2B564E6E8F5B','33407770818F46DF5E62B5EB38DBCDB5','5ED406ABC0A865D5004C98E7B16CD839','996791F2C0A865D50145409687849587','0BAFBA22AAEA4BD06C373989DC8322D4','DC3894F8C0A865D50166A538C712A3F5','3A44C5D0C0A865D500B2AAA67A01263F','9A713704AC66B7F0245A58BB4A3BBBB2','43DF2DB64559A1453B4EAB63F734F50D','489AEBE487D732BD701952F4CE7C9925','A01FD158C0A865D501AA6088F6B18E81','4A6DD866D1B10FA50641B43DD03F4D83','A92713E4C0A865D501AC0D4583CFD927','047904F055302437E61932857014809A','D0057E8AB1C47D30ABDB6149E4AC22B1','6B8E615568F8AAC9ED17A0FDED8A80D7','E2290A05C0A865D50158E45864DB6E80','CDBD8F47C0A865D50194737D212EEB0F','16E7B6E3C0A865D5016E5ECB69CADFF5','2AD51B2B42FC2013656B13EE8E52BA92','4AC3E6C2C0A865D501F7CED87B9BA273','A9C43B8E8E822462C37C3FC590E1DDB0','28F86A92C0A865D50174A57EE7E1BA86','70F66CCAC0A865D5005D7A8DFF0F95A5','F160CB467310766585FA1F74175CF10F','901E7A95C0A865D5000847E7BFACC596','FF9421D7C0A865D501E8AC6F77DFD7D0','8B227B6C6B391E2C4A3F4011D1555DF2','9268C29FC0A865D5013DDBDD087D9D83','693C9DADC0A865D500967E8CB02582C0','97A6CF01C0A865D501B8DC933930712A','E289F88B78EC6632E671B71C59B9205C','EA64B9EFC0A865D500DF20AE15AB6809','76481100C0A865D501DE5F0BE47A6BE1','854F816AB5090871135F2ACFEBC503C5','DAEF3F8EC0A865D5001BCC9F3D04F1AE','CE3358AAC0A865D5007CDDCBCC745B4F','C384A4E7C0A865D500B59FD96B698D9A','74931177C0A865D5008746474AB8EB04','CCF9A581C0A865D500059579253FB936','D853F92C0A5BD6BCCA82982DF9606A92','0D02B53AC7226601637E3FF5E24F4472') AND DELETED=1
2013-02-26 20:38:14.077 THREAD 1 INFO: SELECT ID FROM BINARY_FILE WHERE ID IN ('D1925D48C5CB2BBDC0A69CC92BAE0F13','8A7DD792540E9983AAF27D1DE986CB35','831DBD591AD3E469450011AA115EE957','7B822AC5110193604DDEE41F9E15A715','F0D2A84001882A0CF902FE2B96BC8C90','E6567B5665784F1E02F5272A3C7913BC','F25639EE2881C0DBC0A9E1A41600846C','CF087C92BAEF91BD82BD3D282F6637FF','77614AADF4A43804675E4943C86C7360','5A3281B90FD67E3A7E7B7EC41F235BD7','73FB9FB69453D51EB70BF0ADAF19184B','7F5A19DB065B0D71337F76F6C99E67E6','F6B90DF5EB3A077A01774610AAF7BA61','41E710FDCC4D14088A1BDA10D06CF5BB','A4D421CA6F891BCC0E6D0D671DDAD5EF','BA957A9559D9170D046CC0013103BE5E','911608E39D651334524E1FB80938D0FB','B92A97CED488CBBEDA86890365F65E95','0C1DC66DB8CE8C11B9DB82CB0178E50E','B48F30EA2B93F963B4B485B38C29893A','0586398F6C2FB3D1B278A8BA042A7547','3B45AF9A618E76B79254B032EF3EE870','C9DC01D980B92066940BCAA611F947FB','E45AF8912BE0F7204FC481AF49E7C8F2','DB9D3C4AF766BB14561118178CF722E5','8015A7665B03905464224CE552F3F16F','715A0A4C9ACB32186C6829A6B71520AB','EE6A229DD16D4ED20C9F16D967FE7EA6','5F072B54E9E31C0965353E34764CCC4D','A2606A49C2600298D4C9FFE36FFD361F','8128C8FA90121874659F16F5D225EA75','BA76160D21DD569D1A4D1CE802B5924F','C2C007E1526389162BDFAC74BB555AA2','0A90F640608E042D720597E24F54503D','E3AC0CA99B2B347AF4B18C871989A652','45B9C41149EB162F13D55C6AB7F39965','15D3F7FC20623FFAAFB0F7A71CAB24FE','5BD652D08E1953592AF7FF8EFCD55320','B84D12CBB2CCE8E879E1B1F8B2CDB3FB','4B8B7E1F03ADB487DEFBE700DA0E5BA3','84F3B3F71876D9C3B39C8550640EF078','D2E454C1CF659F94ED90B19A16338A5D','6C68E363278C9D2923759FD949B6CE3B','24E722EFAF142329917DCFD20C3F5F40','CF03ECBDBF81D215578C1C9AF11ADDB2','2D15222F8F244552E3CC01564BBA2859','05084C193EFBBD67FF98E7603D4BCD5A','178A7A8C5301700362A21D72FC317E47','16F986E93E8167FB58F470F5491520A5','CCF2930723F152A4B74565A53D8E3696','5AF7D7280EB06DBC46BB307FE6897744','25E2F214E7466DD64192298FA59E4318','1020A2EE60B31178C6FD251419100586','848D6708174993A37F8A3D735EB5A925','A38A16923F001A125EA4CDD9C970DA00','1A6A32BC529AF57555A6F176A31A4283','93CF93C4DEA1318C7F686005A239EEDC') AND DELETED=0 and CONTENT IS NOT NULL
2013-02-26 20:38:14.092 THREAD 1 INFO: *********************************************
2013-02-26 20:38:14.092 THREAD 1 INFO: Following ids are not present in the database.
2013-02-26 20:38:14.092 THREAD 1 INFO: *********************************************
2013-02-26 20:38:14.092 THREAD 1 INFO: Link is broken for [0] target ids :
2013-02-26 20:38:14.092 THREAD 1 INFO: *********************************************
2013-02-26 20:38:14.092 THREAD 1 INFO: Link is broken for [0] physical file ids :
2013-02-26 20:38:14.092 THREAD 1 INFO: *********************************************
2013-02-26 20:38:14.092 THREAD 1 INFO: Database validation passed.
2013-02-26 20:38:14.092 THREAD 1 INFO: Finished.
The database seems to only stay up for a little bit now. Here is what the out.log says:
I. 02/26 21:46:18. This database is licensed for use with:
I. 02/26 21:46:18. Application: Symantec Endpoint Protection Manager
I. 02/26 21:46:18. Company: Symantec Corp
I. 02/26 21:46:18. Performance warning: Server cache size is too small for database "sem5"
I. 02/26 21:46:18. Database server started at Tue Feb 26 2013 21:46
I. 02/26 21:46:18. Trying to start SharedMemory link ...
I. 02/26 21:46:18. SharedMemory link started successfully
I. 02/26 21:46:18. Trying to start TCPIP link ...
I. 02/26 21:46:18. Starting on port 2638
I. 02/26 21:46:18. TCPIP link started successfully
I. 02/26 21:46:19. Now accepting requests
I. 02/26 21:46:20. Performance warning: No unique index or primary key for table "SERVER_SYSTEM_LOG_1" in database "sem5"
I. 02/26 21:46:20. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:20. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:20. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:20. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:20. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:20. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:21. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:21. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:21. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:21. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:31. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:31. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:32. Starting checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:46:33. Finished checkpoint of "sem5" (sem5.db) at Tue Feb 26 2013 21:46
I. 02/26 21:47:21. Performance warning: View "V_CLIENT_CHANGE_LOG" in database "sem5" was invalidated due to DDL operations on one of its referenced objects
E. 02/26 21:48:51. *** ERROR *** Assertion failed: 200505 (12.0.1.3554)[sem5]
Checksum failure on page 2951
I. 02/26 21:48:52. Database server shutdown requested via server console