Regardless of how much memory you have on that server, you're limited with regards to how much memory the File Reader process will use by the settings specific to that server. So you might be looking at adjusting the setting for that under "Advanced Settings". There's a parameter for the file reader max memory.
I'd recommend to you that you don't do this without first opening a case and consulting support, though if you're game, you might try bumping that up a little bit at a time and see if it improves your processing times.
Are you using a Windows server for this, or a Linux server? You can get better rates out of Linux without any advanced configuration. If that's an option for you, I'd recommend it...larger installs I usually recommend Linux as the OS on Network Monitors for just this reason.
~Keith